Shopify Payments 101: My Guide to Shopify’s Payment Gateway

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Shopify, our top ecommerce website builder for 2025, simplifies the online payment process by offering an integrated payment gateway: Shopify Payments. Whether you’re just setting up your store and are overwhelmed by the processes, or you’re a seasoned seller looking to make the move from a third party gateway, Shopify Payments could save you both time and money.

In this guide, I’ll give you the low down on Shopify Payments and teach you how to set it up on your Shopify account and start making payments.

Key Takeaways 🔍

  • Shopify Payments is available free of charge on all plans
  • You don’t have to pay transaction fees when you use Shopify Payments, and your online processing fees will decrease as you move up through Shopify’s plans
  • Shopify Payments is available in 39 countries, including the US
  • Shopify payments’ setup process is simple, but requires personal and business documents for verification

How Does Shopify Payments Work?

Shopify Payments is Shopify’s native payment gateway that provides an all-in-one solution for merchants. A payment gateway is a service used to process and receive online payments from customers; it acts as a bridge between the customer and merchant’s bank accounts to securely transfer the money to the seller.

Shopify Payments showing 10 payments accepted payment types
Shopify Payments lets you accept major debit and credit cards, digital wallets, and Shop Pay. Source: Website Builder Expert

What’s the Difference Between Shopify Payments and Other Payment Gateways?

Since Shopify Payments is a native solution, it streamlines the overall payment process by cutting out the need to register for external accounts and reducing the time it takes to receive payments. Plus, you won’t have to pay transaction fees, which are often demanded by external gateways.

To understand this further, let’s take a look at the typical payment process for a merchant using an external payment gateway, versus the process of using a native one like Shopify Payments:

Payment Process with an External Payment Gateway

  1. Set up a merchant account
  2. Set up a payment gateway and link this to your merchant account
  3. Integrate the payment gateway into your Shopify checkout
  4. Pay processing fees to Shopify and transaction fees to your external gateway for each payment
  5. Receive payouts in up to five business days

Payment Process with Shopify Payments

  1. Set up Shopify Payments
  2. Pay a processing fee to Shopify and zero transaction fees for each payment
  3. Receive payouts in one to three business days

How Much Does Shopify Payments Cost?

Shopify Payments is free to use with all Shopify plans. When using it, you’ll pay no transaction fees, and will only be charged a payment processing fee that decreases with each plan.

Basic plan Grow plan Advanced plan
Shopify Payments online processing fees 2.9% + 30¢ 2.7% + 30¢ 2.5% + 30¢
Shopify Payments in-person processing fees 2.6%+ 10¢ 2.5%+ 10¢ 2.4%+ 10¢
Shopify Payments transaction fees None None None
Third party gateway transaction fees 2% + your chosen gateway’s standard processing fee 1% + your chosen gateway’s standard processing fee 0.6% + your chosen gateway's standard processing fee

If your business sells in a brick and mortar store, you can also use Shopify Payments with a Shopify Point of Sale (POS) device. As shown in our table, these fees will range between 2.4% + 10¢ and 2.6% + 10¢, depending on your account.

Does Shopify Cover Chargeback Fees?

Shopify will pay a chargeback fee for you if the chargeback is resolved in your favor. If the chargeback is resolved in the customer’s favor, or if you choose not to dispute it, then you’ll have to pay both the disputed amount and the extra chargeback fee, which is a standardized $15 for US merchants.

notification receiving a chargeback for an order within Shopify admin
Chargebacks can be monitored from your Shopify admin. Source: Website Builder Expert
Top Tip 💡 A chargeback happens when a customer makes a purchase from you, then files a complaint with their credit card company to try to cancel the transaction.

How To Set Up Shopify Payments

Shopify payments is integrated into your Shopify admin automatically, and it takes around five minutes to get set up. 

The information required will vary slightly depending on the country you’re in, but the process will be similar on the whole. Here’s how to set up Shopify Payments in the US:

#1. Enter Your Account Settings

From your Shopify dashboard, select the settings button in the bottom left corner of the sidebar.

Shopify payment settings on dashboard
The payments hub allows you to add multiple payment methods and customize payments through apps. Source: Website Builder Expert

Once you’re in the settings, select payments; you’ll be able to view and set up payment methods for your store on this page. Shopify Payments should be the first payment option you see. Select complete account setup, and you’ll be prompted to add any details needed. Then, submit details.

Shopify payments settings page prompting to complete account setup by submitting details
I was asked to provide my personal and business information before being able to accept payments. Source: Website Builder Expert

#2. Confirm Your Business Type

Next, you’ll need to classify your business as one of the following:

  • Individual/sole proprietor/single-member LLC
  • Corporation
  • LLC
  • Partnership
  • Nonprofit
Top Tip: You won’t be able to change this business type later without contacting support, so for a smooth setup, make sure you’ve selected the correct statement.
account representative details form
The details requested will change depending on your business type and location. Source: Website Builder Expert

#3. Share Business Owner Information

Next, you just have to provide some basic details about your business, starting with information about the account representative – or the owner of your business. For an Individual or sole proprietor, I was asked to submit the business owner’s:

  • Name
  • SSN
  • Email address
  • Phone number
  • Personal address

If you’re a corporation, you’ll have to provide your business number, EIN, or Taxpayer Identification Number.

Shopify Payments business details form
Your store details are collected by Shopify for verification purposes. Source: Website Builder Expert

#4. Input Business Details

The final step is to include some basic store details, like your industry type, company name, and what you’re selling.

Shopify asks for this information mainly so that it knows who’s joining Shopify Payments. While you should provide the correct information, it’s not set in stone and won’t affect your store, so don’t worry if you want to change these details at a later date!

Shopify payments set up review page
Reviewing your details before you submit them will help to avoid mistakes. Source: Website Builder Expert

It’s as simple as that! Your information will be verified in up to three business days, after which you’ll be ready to start accepting payments!

Do I have To Share My Bank Details?

You might be wondering why you haven’t been asked to input any bank details. If your business is in the United States or Puerto Rico and meets the eligibility requirements, Shopify Payments will automatically set you up with a Shopify Balance account.

This will let you manage your ecommerce store’s payments and transactions in one place, and comes with perks like faster payouts and cashback on spending. Bank details will only be requested if you’re not eligible for a Shopify Balance account.

Top Tip: Make sure you input all of your business details and, if needed, your banking information within 21 days of your first sale – otherwise, payments will automatically be refunded to the buyer!
Shopify payment settings showing test mode at the bottom of the page
Test mode is a great way to check your Shopify Payments settings are configured correctly. Source: Website Builder Expert

Once you’ve been approved for and set up your preferences in Shopify Payments, you should test a transaction to see how the customer will be able to purchase an order, as well as how your company processes these orders.

Test mode disables the use of real credit cards in your store, so you can mimic the whole payment and iron out any issues that crop up. It can be found by going to your settings, scrolling to the bottom of the payments section, and toggling it on.

Top Tip: It’s important to turn test mode off as soon as you’ve finished testing to avoid losing profits, as real customer payments won’t be accepted!

Eligibility and Requirements

Shopify Payments is a convenient payment solution for anyone with an online Shopify store, but unfortunately, there are strict criteria for eligibility that not all businesses will meet.

Which Countries Does Shopify Payments Support?

Shopify Payments for online stores is available in 39 countries. This list of supported countries includes the United States, Canada, Hong Kong, Singapore, and the United Kingdom.

If you’re looking to use Shopify Payments for in-person payment processing, the list of supported countries narrows to 18. 

Does Shopify Payments Restrict Businesses?

You also won’t be able to use Shopify Payments if your business offerings are prohibited. Prohibited products and services vary in each country depending on regulations, but across the board, you cannot use Shopify Payments to sell:

  • Regulated or illegal products and services
  • Financial and professional services
  • Adult products
  • Pharmaceuticals
  • Gambling products and services
  • Counterfeit products

This list prohibits a lot of lawful businesses from using Shopify Payments, such as law firms, mortgage consultancies, online pharmacies, and even sites selling fireworks. On top of this list, there are additional guidelines for each country. Shopify states that it may shut down any non-compliant store with zero notice, so it’s important to be aware of the guidelines that apply to you.

Does It Require Two-Step Authentication?

You’ll also be required to secure your account with two-step authentication before you can use Shopify Payments. This means that, to log into your account, you’ll have to use your standard login credentials as well as a secondary security measure like SMS or an authenticator app.

Prompt to turn on two-step authentication for Shopify payments
Without two-step authentication your payments will be put on hold. Source: Website Builder Expert

How Do I Set Up Two-Step Authentication on Shopify?

Turn on two-step authentication by clicking your profile icon from the top bar of your Shopify admin. Select your username, then head to the “Privacy” tab and scroll to enable two-step authentication.

You’ll need to add at least one authentication method to your Shopify account, such as an authentication app. Backup methods can be added for extra security and peace of mind that no unwanted parties can access your Shopify account.

Alternatives to Shopify Payments

If you’ve built an online store with Shopify already, utilizing its payment gateway is definitely worthwhile. However, other ecommerce platforms offer similar integrated payment services. Here’s an overview of the main features offered by the leading all-in-one platforms:

Shopify Payments Wix Payments Squarespace Payments
Online payment processing fees 2.5%+30¢ - 2.9% + 30¢ $2.9+30¢ $2.9 + 30¢
Transaction fees None None 0%-3% depending on the plan
Countries available 23 15 3

While Shopify, Wix, and Squarespace all charge the same processing fee of 2.9% + 30¢, Shopify offers lower rates to anyone on its Standard plan or above. While this is a standout feature, you should consider whether the reduced processing fees will outweigh the price of upgrading your Shopify plan.

Shopify Payments is also the most widely available, and comes with no transaction fees. Compared to Wix Payments, which is only available in three countries and charges transaction fees on its business plan, I’d recommend Shopify Payments as the best overall.

Summary

Shopify Payments is a neatly-packaged solution for Shopify merchants wanting to manage and monitor everything payment-related in one place. That said, its main drawback is its eligibility criteria, which will prevent a lot of businesses from using the service. This isn’t singular to Shopify, as Wix and Squarespace are limited to even fewer countries.

Luckily, third party payment gateways can be integrated into your Shopify store as an alternative.

For those who are eligible for Shopify Payments, you now know how to integrate it into your store and start seeing the rewards!

Written by:
Annie Angus is a Writer for Website Builder Expert with a passion for shaping jargon-heavy research into digestible content. She has previously researched and written about industries ranging from tech to fashion, and now, after testing our top website builders such as Wix and Squarespace, she is enthusiastic to share her findings with our readers. With first-hand experience in utilizing social media and online marketplaces to grow a small handmade clothing business, Annie understands the priorities and concerns held by SME owners, and knows precisely what they look for in a website builder. She combines this unique perspective with her knowledge of website builders to produce engaging content spanning all areas of the small business journey, from creating a strong website to growing and maintaining an audience.

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